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Commit f390d4b6 authored by Laura Cook's avatar Laura Cook
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added input control

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dunnart/Snakefile
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...@@ -539,8 +539,7 @@ rule call_peaks_macs2_pooled_replicates: ...@@ -539,8 +539,7 @@ rule call_peaks_macs2_pooled_replicates:
input: input:
H3K4me3 = "results/bowtie2/H3K4me3_pooled_PPq30.sorted.dedup.bam", H3K4me3 = "results/bowtie2/H3K4me3_pooled_PPq30.sorted.dedup.bam",
H3K27ac = "results/bowtie2/H3K27ac_pooled_PPq30.sorted.dedup.bam", H3K27ac = "results/bowtie2/H3K27ac_pooled_PPq30.sorted.dedup.bam",
control27ac = "results/bowtie2/B-1_input_PPq30.sorted.dedup.bam", input = "results/bowtie2/input_pooled_PPq30.sorted.dedup.bam"
control4me3 = "results/bowtie2/A-1_input_PPq30.sorted.dedup.bam"
output: output:
"results/macs2/H3K4me3_pooled_macs2_peaks.xls", "results/macs2/H3K4me3_pooled_macs2_peaks.xls",
"results/macs2/H3K4me3_pooled_macs2_summits.bed", "results/macs2/H3K4me3_pooled_macs2_summits.bed",
......
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