diff --git a/dunnart/Snakefile b/dunnart/Snakefile
index 1a09169ee6fdf31eed5423d6aec0724192a9e526..7e42159dcf15ec207879da40c4f0bca4bf5c96b2 100644
--- a/dunnart/Snakefile
+++ b/dunnart/Snakefile
@@ -539,8 +539,7 @@ rule call_peaks_macs2_pooled_replicates:
     input:
         H3K4me3 = "results/bowtie2/H3K4me3_pooled_PPq30.sorted.dedup.bam",
         H3K27ac = "results/bowtie2/H3K27ac_pooled_PPq30.sorted.dedup.bam",
-        control27ac = "results/bowtie2/B-1_input_PPq30.sorted.dedup.bam",
-        control4me3 = "results/bowtie2/A-1_input_PPq30.sorted.dedup.bam"
+        input = "results/bowtie2/input_pooled_PPq30.sorted.dedup.bam"
     output:
         "results/macs2/H3K4me3_pooled_macs2_peaks.xls",
         "results/macs2/H3K4me3_pooled_macs2_summits.bed",