From f390d4b672640af37043010c1b520d7328156a26 Mon Sep 17 00:00:00 2001
From: Laura Cook <l.cook2@student.unimelb.edu.au>
Date: Fri, 28 Aug 2020 14:44:53 +1000
Subject: [PATCH] added input control
---
dunnart/Snakefile | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/dunnart/Snakefile b/dunnart/Snakefile
index 1a09169..7e42159 100644
--- a/dunnart/Snakefile
+++ b/dunnart/Snakefile
@@ -539,8 +539,7 @@ rule call_peaks_macs2_pooled_replicates:
input:
H3K4me3 = "results/bowtie2/H3K4me3_pooled_PPq30.sorted.dedup.bam",
H3K27ac = "results/bowtie2/H3K27ac_pooled_PPq30.sorted.dedup.bam",
- control27ac = "results/bowtie2/B-1_input_PPq30.sorted.dedup.bam",
- control4me3 = "results/bowtie2/A-1_input_PPq30.sorted.dedup.bam"
+ input = "results/bowtie2/input_pooled_PPq30.sorted.dedup.bam"
output:
"results/macs2/H3K4me3_pooled_macs2_peaks.xls",
"results/macs2/H3K4me3_pooled_macs2_summits.bed",
--
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