change directory

mouse/Snakefile

@@ -536,14 +536,13 @@ rule bamToBed:
     shell:
         "samtools sort -n {input} | bedtools bamtobed -i - > {output}"
 
-
 # ## Fraction of reads in peaks
 rule frip:
     input:
         bed = "results/bwa/{case}_{stage}_{mark}_q30.sorted.dedup.bed",
         peak = "results/macs2/{case}_vs_{control}_{stage}_{mark}_macs2_peaks.narrowPeak"
     output:
-        "results/frip/{case}_vs_{control}_{stage}_{mark}.frip.txt"
+        "results/qc/{case}_vs_{control}_{stage}_{mark}.frip.txt"
     shell:
         "python2.7 scripts/encode_frip.py {input.bed} {input.peak} > {output}"