From b2d4468bbc71fd599e4bc802ae28a3bb6b4f72e4 Mon Sep 17 00:00:00 2001
From: Laura Cook <l.cook2@student.unimelb.edu.au>
Date: Fri, 28 Aug 2020 14:42:39 +1000
Subject: [PATCH] change directory
---
mouse/Snakefile | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/mouse/Snakefile b/mouse/Snakefile
index 1b697b3..ac9da71 100644
--- a/mouse/Snakefile
+++ b/mouse/Snakefile
@@ -536,14 +536,13 @@ rule bamToBed:
shell:
"samtools sort -n {input} | bedtools bamtobed -i - > {output}"
-
# ## Fraction of reads in peaks
rule frip:
input:
bed = "results/bwa/{case}_{stage}_{mark}_q30.sorted.dedup.bed",
peak = "results/macs2/{case}_vs_{control}_{stage}_{mark}_macs2_peaks.narrowPeak"
output:
- "results/frip/{case}_vs_{control}_{stage}_{mark}.frip.txt"
+ "results/qc/{case}_vs_{control}_{stage}_{mark}.frip.txt"
shell:
"python2.7 scripts/encode_frip.py {input.bed} {input.peak} > {output}"
--
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