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Commit 835656b1 authored by Laura Cook's avatar Laura Cook
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added -snakefile flag to command to call a specific snakefile

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mouse/README.md
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...@@ -39,7 +39,7 @@ conda activate chip ...@@ -39,7 +39,7 @@ conda activate chip
Run pipeline with the following command: Run pipeline with the following command:
``` ```
snakemake -j 6 --cluster-config envs/cluster.json --cluster "sbatch -A {cluster.account} -t {cluster.time} -p {cluster.partition} --nodes {cluster.nodes} --ntasks {cluster.ntasks} --mem {cluster.mem}" & snakemake --snakefile [snakemake file] -j 6 --cluster-config envs/cluster.json --cluster "sbatch -A {cluster.account} -t {cluster.time} -p {cluster.partition} --nodes {cluster.nodes} --ntasks {cluster.ntasks} --mem {cluster.mem}" &
``` ```
Cluster configuration file: configs/cluster.json\ Cluster configuration file: configs/cluster.json\
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