diff --git a/mouse/README.md b/mouse/README.md
index bc3a2146730c6763d5b9a5f3fe754d630edea54e..20b14fb59817c2fee5cdfa5852f147bfe88c8bf5 100644
--- a/mouse/README.md
+++ b/mouse/README.md
@@ -39,7 +39,7 @@ conda activate chip
 Run pipeline with the following command:
 
 ```
-snakemake -j 6 --cluster-config envs/cluster.json --cluster "sbatch -A {cluster.account} -t {cluster.time} -p {cluster.partition} --nodes {cluster.nodes} --ntasks {cluster.ntasks} --mem {cluster.mem}" &
+snakemake --snakefile [snakemake file] -j 6 --cluster-config envs/cluster.json --cluster "sbatch -A {cluster.account} -t {cluster.time} -p {cluster.partition} --nodes {cluster.nodes} --ntasks {cluster.ntasks} --mem {cluster.mem}" &
 ```
 
 Cluster configuration file: configs/cluster.json\