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Add a how-to guide for scenario modelling
This adds a new example SIRV model and shows how to use it to compare two interventions with different effects. We use the "sphinx-togglebutton" extension to collapse each code block in the scenario modelling guide, so that the user can focus on the main text and results figures, but also expand these blocks to examine any implementation details of interest. We also include each top-level page in its own table of contents. For example, the first section link for the Getting Started tutorial is now "Getting Started", and "Installation" is now the second link.
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- doc/api/examples.rst 19 additions, 0 deletionsdoc/api/examples.rst
- doc/api/index.rst 5 additions, 0 deletionsdoc/api/index.rst
- doc/conf.py 1 addition, 0 deletionsdoc/conf.py
- doc/development/index.rst 1 addition, 0 deletionsdoc/development/index.rst
- doc/getting-started/index.rst 1 addition, 0 deletionsdoc/getting-started/index.rst
- doc/how-to/index.rst 6 additions, 0 deletionsdoc/how-to/index.rst
- doc/how-to/scenario-modelling.rst 286 additions, 0 deletionsdoc/how-to/scenario-modelling.rst
- doc/how-to/scenario-sirv-correlations.png 0 additions, 0 deletionsdoc/how-to/scenario-sirv-correlations.png
- doc/how-to/scenario-sirv-epi-curves.png 0 additions, 0 deletionsdoc/how-to/scenario-sirv-epi-curves.png
- doc/how-to/scenario-sirv-final-sizes.png 0 additions, 0 deletionsdoc/how-to/scenario-sirv-final-sizes.png
- doc/how-to/scenario-sirv-prevented-infections.png 0 additions, 0 deletionsdoc/how-to/scenario-sirv-prevented-infections.png
- doc/index.rst 3 additions, 1 deletiondoc/index.rst
- requirements-rtd.txt 1 addition, 0 deletionsrequirements-rtd.txt
- src/pypfilt/examples/sirv.py 204 additions, 0 deletionssrc/pypfilt/examples/sirv.py
- src/pypfilt/examples/sirv.toml 46 additions, 0 deletionssrc/pypfilt/examples/sirv.toml
- tests/test_sirv.py 306 additions, 0 deletionstests/test_sirv.py
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