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Update baseline parameters and outputs
The values for consUl, delta_iR, lambdaI.sel, M_t_1, and PMF have all been updated in response to feedback from our clinical collaborators. The reticulocyte release rate function (rho) has also been changed, and introduces two new parameters (rho_slope and rho_inflection). The sensitivity analysis outputs are not updated in this commit, and will need to be regenerated when we're satisfied with this new parameter baseline.
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- NAMESPACE 1 addition, 0 deletionsNAMESPACE
- R/rate_functions.R 22 additions, 6 deletionsR/rate_functions.R
- data-raw/input-parameters-pf.csv 7 additions, 5 deletionsdata-raw/input-parameters-pf.csv
- data-raw/parameters.R 6 additions, 2 deletionsdata-raw/parameters.R
- data/parameters_pf.rda 0 additions, 0 deletionsdata/parameters_pf.rda
- data/parameters_pv.rda 0 additions, 0 deletionsdata/parameters_pv.rda
- outputs/baseline-no_inf.csv 1200 additions, 1200 deletionsoutputs/baseline-no_inf.csv
- outputs/baseline-pf.csv 1200 additions, 1200 deletionsoutputs/baseline-pf.csv
- outputs/baseline-pv.csv 1200 additions, 1200 deletionsoutputs/baseline-pv.csv
- run-baseline-scenarios.R 1 addition, 1 deletionrun-baseline-scenarios.R
- vignettes/articles/model-description.Rmd 35 additions, 36 deletionsvignettes/articles/model-description.Rmd
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