first commit of conda environment with packages for whole genome alignment

cross_species_comparison/env/wga.yaml

+name: wga
+channels:
+  - bioconda
+  - biocore
+  - conda-forge
+  - defaults
+dependencies:
+  - _libgcc_mutex=0.1=conda_forge
+  - _openmp_mutex=4.5=1_gnu
+  - bzip2=1.0.8=h516909a_3
+  - c-ares=1.11.0=h470a237_1
+  - ca-certificates=2020.6.20=hecda079_0
+  - cairo=1.16.0=h3fc0475_1005
+  - cd-hit=4.8.1=h8b12597_3
+  - certifi=2020.6.20=py38h32f6830_0
+  - curl=7.71.1=he644dc0_6
+  - entrez-direct=13.9=pl526h375a9b1_0
+  - expat=2.2.9=he1b5a44_2
+  - fontconfig=2.13.1=h1056068_1002
+  - freetype=2.10.2=he06d7ca_0
+  - fribidi=1.0.10=h516909a_0
+  - genometools-genometools=1.6.1=py38h23571c4_2
+  - gettext=0.19.8.1=hc5be6a0_1002
+  - glib=2.66.0=h0dae87d_0
+  - gmp=6.1.2=hf484d3e_1000
+  - gnutls=3.5.19=h2a4e5f8_1
+  - graphite2=1.3.13=he1b5a44_1001
+  - harfbuzz=2.7.2=hee91db6_0
+  - hmmer=3.3.1=he1b5a44_0
+  - icu=67.1=he1b5a44_0
+  - krb5=1.17.1=hfafb76e_3
+  - ld_impl_linux-64=2.35=h769bd43_9
+  - libcurl=7.71.1=hcdd3856_6
+  - libedit=3.1.20191231=he28a2e2_2
+  - libev=4.33=h516909a_1
+  - libffi=3.2.1=he1b5a44_1007
+  - libgcc-ng=9.3.0=h24d8f2e_16
+  - libgomp=9.3.0=h24d8f2e_16
+  - libiconv=1.16=h516909a_0
+  - libnghttp2=1.41.0=hab1572f_1
+  - libpng=1.6.37=hed695b0_2
+  - libssh2=1.9.0=hab1572f_5
+  - libstdcxx-ng=9.3.0=hdf63c60_16
+  - libuuid=2.32.1=h14c3975_1000
+  - libxcb=1.13=h14c3975_1002
+  - libxml2=2.9.10=h68273f3_2
+  - llvm-openmp=8.0.1=hc9558a2_0
+  - ltr_retriever=2.9.0=0
+  - mafft=7.471=h516909a_0
+  - ncurses=6.2=he1b5a44_1
+  - nettle=3.3=0
+  - nseg=1.0.1=h516909a_0
+  - openmp=8.0.1=0
+  - openssl=1.1.1h=h516909a_0
+  - pango=1.42.4=h7062337_4
+  - pcre=8.44=he1b5a44_0
+  - perl=5.26.2=h516909a_1006
+  - perl-app-cpanminus=1.7044=pl526_1
+  - perl-archive-tar=2.32=pl526_0
+  - perl-base=2.23=pl526_1
+  - perl-business-isbn=3.004=pl526_0
+  - perl-business-isbn-data=20140910.003=pl526_0
+  - perl-carp=1.38=pl526_3
+  - perl-common-sense=3.74=pl526_2
+  - perl-compress-raw-bzip2=2.087=pl526he1b5a44_0
+  - perl-compress-raw-zlib=2.087=pl526hc9558a2_0
+  - perl-constant=1.33=pl526_1
+  - perl-data-dumper=2.173=pl526_0
+  - perl-digest-hmac=1.03=pl526_3
+  - perl-digest-md5=2.55=pl526_0
+  - perl-encode=2.88=pl526_1
+  - perl-encode-locale=1.05=pl526_6
+  - perl-exporter=5.72=pl526_1
+  - perl-exporter-tiny=1.002001=pl526_0
+  - perl-extutils-makemaker=7.36=pl526_1
+  - perl-file-listing=6.04=pl526_1
+  - perl-file-path=2.16=pl526_0
+  - perl-file-temp=0.2304=pl526_2
+  - perl-file-which=1.23=pl526_0
+  - perl-html-parser=3.72=pl526h6bb024c_5
+  - perl-html-tagset=3.20=pl526_3
+  - perl-html-tree=5.07=pl526_1
+  - perl-http-cookies=6.04=pl526_0
+  - perl-http-daemon=6.01=pl526_1
+  - perl-http-date=6.02=pl526_3
+  - perl-http-message=6.18=pl526_0
+  - perl-http-negotiate=6.01=pl526_3
+  - perl-io-compress=2.087=pl526he1b5a44_0
+  - perl-io-html=1.001=pl526_2
+  - perl-io-socket-ssl=2.066=pl526_0
+  - perl-io-zlib=1.10=pl526_2
+  - perl-json=4.02=pl526_0
+  - perl-json-xs=2.34=pl526h6bb024c_3
+  - perl-libwww-perl=6.39=pl526_0
+  - perl-list-moreutils=0.428=pl526_1
+  - perl-list-moreutils-xs=0.428=pl526_0
+  - perl-lwp-mediatypes=6.04=pl526_0
+  - perl-lwp-protocol-https=6.07=pl526_4
+  - perl-mime-base64=3.15=pl526_1
+  - perl-mozilla-ca=20180117=pl526_1
+  - perl-net-http=6.19=pl526_0
+  - perl-net-ssleay=1.88=pl526h90d6eec_0
+  - perl-ntlm=1.09=pl526_4
+  - perl-parent=0.236=pl526_1
+  - perl-pathtools=3.75=pl526h14c3975_1
+  - perl-scalar-list-utils=1.52=pl526h516909a_0
+  - perl-socket=2.027=pl526_1
+  - perl-storable=3.15=pl526h14c3975_0
+  - perl-test-requiresinternet=0.05=pl526_0
+  - perl-text-soundex=3.05=pl526_1000
+  - perl-time-local=1.28=pl526_1
+  - perl-try-tiny=0.30=pl526_1
+  - perl-types-serialiser=1.0=pl526_2
+  - perl-uri=1.76=pl526_0
+  - perl-www-robotrules=6.02=pl526_3
+  - perl-xml-namespacesupport=1.12=pl526_0
+  - perl-xml-parser=2.44=pl526h4e0c4b3_7
+  - perl-xml-sax=1.02=pl526_0
+  - perl-xml-sax-base=1.09=pl526_0
+  - perl-xml-sax-expat=0.51=pl526_3
+  - perl-xml-simple=2.25=pl526_1
+  - perl-xsloader=0.24=pl526_0
+  - pip=20.2.3=py_0
+  - pixman=0.38.0=h516909a_1003
+  - pthread-stubs=0.4=h14c3975_1001
+  - python=3.8.5=h1103e12_8_cpython
+  - python_abi=3.8=1_cp38
+  - readline=8.0=he28a2e2_2
+  - recon=1.08=h516909a_2
+  - repeatmasker=4.1.0=pl526_0
+  - repeatmodeler=2.0.1=pl526_0
+  - repeatscout=1.0.6=h516909a_1
+  - rmblast=2.9.0=h2d02072_0
+  - setuptools=49.6.0=py38h32f6830_1
+  - sqlite=3.33.0=h4cf870e_0
+  - tk=8.6.10=hed695b0_0
+  - trf=4.09.1=h516909a_0
+  - wheel=0.35.1=pyh9f0ad1d_0
+  - xorg-kbproto=1.0.7=h14c3975_1002
+  - xorg-libice=1.0.10=h516909a_0
+  - xorg-libsm=1.2.3=h84519dc_1000
+  - xorg-libx11=1.6.12=h516909a_0
+  - xorg-libxau=1.0.9=h14c3975_0
+  - xorg-libxdmcp=1.1.3=h516909a_0
+  - xorg-libxext=1.3.4=h516909a_0
+  - xorg-libxrender=0.9.10=h516909a_1002
+  - xorg-renderproto=0.11.1=h14c3975_1002
+  - xorg-xextproto=7.3.0=h14c3975_1002
+  - xorg-xproto=7.0.31=h14c3975_1007
+  - xz=5.2.5=h516909a_1
+  - zlib=1.2.11=h516909a_1009
+prefix: /home/lecook/.conda/envs/wga
+