remove merging peak files

dunnart/Snakefile

@@ -606,18 +606,6 @@ rule frip:
 # Based on ENCODE `overlap_peaks.py` - recommended for histone marks.
 # Need to pool peaks first for each replicate
 
-rule pool_peaks:
-    input:
-        mark1 = ["results/macs2/A-2_H3K4me3_vs_A-1_input_macs2_peaks.narrowPeak", "results/macs2/B-2_H3K4me3_vs_B-1_input_macs2_peaks.narrowPeak"],
-        mark2 = ["results/macs2/A-3_H3K27ac_vs_A-1_input_macs2_peaks.narrowPeak", "results/macs2/B-3_H3K27ac_vs_B-1_input_macs2_peaks.narrowPeak"]
-    output:
-        mark1 = "results/macs2/H3K4me3_pooled_macs2_peaks.narrowPeak",
-        mark2 = "results/macs2/H3K27ac_pooled_macs2_peaks.narrowPeak"
-    run:
-        shell("cat {input.mark1} | sort -k1,1 -k2,2n - | bedtools merge -i - > {output.mark1}")
-        shell("cat {input.mark2}  | sort -k1,1 -k2,2n - | bedtools merge -i - > {output.mark2}")
-
-
 rule overlap_peaks_H3K4me3:
     input:
         peak1="results/macs2/A-2_H3K4me3_vs_A-1_input_macs2_peaks.narrowPeak",