chr2Filter in variant filtering workflow
Array[String]? chr2Filter = []
String vcfChrFilter = if length(chr2Filter) == 0 then "" else "--char ${sep='--char ' chr2Filter}"
chr2Filter not called anywhere else?
It doesn't like the sep either
[bobbieshaban@spartan-login2 HPGAP-devel]$ java -jar womtool.jar validate HPGAP-workflow-main.wdl
ERROR: Missing value or call: Couldn't find value or call with name 'sep' in workflow (line 34):
String vcfChrFilter = if length(chr2Filter) == 0 then "" else "--char ${sep='--char ' chr2Filter}"