From e650b43f1affedab10677db29b619219e70847f3 Mon Sep 17 00:00:00 2001
From: Laura Cook <l.cook2@student.unimelb.edu.au>
Date: Wed, 23 Sep 2020 20:00:55 +1000
Subject: [PATCH] edited snakemake command
---
mouse/README.md | 14 ++++++++++++++
1 file changed, 14 insertions(+)
diff --git a/mouse/README.md b/mouse/README.md
index 20b14fb..e4e5b77 100644
--- a/mouse/README.md
+++ b/mouse/README.md
@@ -42,6 +42,20 @@ Run pipeline with the following command:
snakemake --snakefile [snakemake file] -j 6 --cluster-config envs/cluster.json --cluster "sbatch -A {cluster.account} -t {cluster.time} -p {cluster.partition} --nodes {cluster.nodes} --ntasks {cluster.ntasks} --mem {cluster.mem}" &
```
+H3K27ac:
+```
+snakemake -j 6 --snakefile Snakefile_H3K27ac --cluster-config configs/cluster.json --cluster "sbatch -A {cluster.account} -t {cluster.time} -p {cluster.partition} --nodes {cluster.nodes} --ntasks {cluster.ntasks} --mem {cluster.mem}" &
+
+```
+
+H3K4me3:
+```
+snakemake -j 6 --snakefile Snakefile_H3K4me3 --cluster-config configs/cluster.json --cluster "sbatch -A {cluster.account} -t {cluster.time} -p {cluster.partition} --nodes {cluster.nodes} --ntasks {cluster.ntasks} --mem {cluster.mem}" &
+
+```
+
+
+
Cluster configuration file: configs/cluster.json\
Sample configuration file: configs/config.yaml\
Sample text file: configs/SSR.text\
--
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