diff --git a/mouse/README.md b/mouse/README.md index 20b14fb59817c2fee5cdfa5852f147bfe88c8bf5..e4e5b77993dbc1a84cfacb8095fb8624d74802d9 100644 --- a/mouse/README.md +++ b/mouse/README.md @@ -42,6 +42,20 @@ Run pipeline with the following command: snakemake --snakefile [snakemake file] -j 6 --cluster-config envs/cluster.json --cluster "sbatch -A {cluster.account} -t {cluster.time} -p {cluster.partition} --nodes {cluster.nodes} --ntasks {cluster.ntasks} --mem {cluster.mem}" & ``` +H3K27ac: +``` +snakemake -j 6 --snakefile Snakefile_H3K27ac --cluster-config configs/cluster.json --cluster "sbatch -A {cluster.account} -t {cluster.time} -p {cluster.partition} --nodes {cluster.nodes} --ntasks {cluster.ntasks} --mem {cluster.mem}" & + +``` + +H3K4me3: +``` +snakemake -j 6 --snakefile Snakefile_H3K4me3 --cluster-config configs/cluster.json --cluster "sbatch -A {cluster.account} -t {cluster.time} -p {cluster.partition} --nodes {cluster.nodes} --ntasks {cluster.ntasks} --mem {cluster.mem}" & + +``` + + + Cluster configuration file: configs/cluster.json\ Sample configuration file: configs/config.yaml\ Sample text file: configs/SSR.text\