From d553fcde27abceed7ccba333118239223b118ca0 Mon Sep 17 00:00:00 2001
From: Laura Cook <l.cook2@student.unimelb.edu.au>
Date: Fri, 24 Jul 2020 17:06:20 +1000
Subject: [PATCH] compute effective genome size for new assembly
---
dunnart/README.md | 5 +++++
1 file changed, 5 insertions(+)
diff --git a/dunnart/README.md b/dunnart/README.md
index 0ca55be..5880c5f 100644
--- a/dunnart/README.md
+++ b/dunnart/README.md
@@ -271,6 +271,11 @@ Run `unique-kmers.py` on dunnart genome for read length of 150bp:
```{bash eval=FALSE}
/usr/local/bin/unique-kmers.py -k 150 dunnart_pseudochr_vs_mSarHar1.11_v1.fa
+
+```
+```
+Estimated number of unique 150-mers in /Users/lauracook/../../Volumes/macOS/genomes/Scras_dunnart_assem1.0_pb-ont-illsr_flyeassem_red-rd-scfitr2_pil2xwgs2_60chr.fasta: 2740338543
+Total estimated number of unique 150-mers: 2740338543
```
<details><summary>_Total estimated number of unique 150-mers: 3074798085_</summary>
<p>
--
GitLab