diff --git a/dunnart/README.md b/dunnart/README.md index 5880c5f3de99a100e67ccb3aae71b2b10542a3ae..7d105097af1069f0e6d178d741804b59df8c6231 100644 --- a/dunnart/README.md +++ b/dunnart/README.md @@ -339,6 +339,17 @@ Total estimated number of unique 150-mers: 2740338543 ### rule get_picard_complexity_metrics: +Library Complexity + +ChIP-seq Standards: + +| PBC1 | PBC2 | Bottlenecking level | NRF | Complexity | Flag colors | +|:-:|:-:|:-:|:-:|:-:|:-:| +| < 0.5 | < 1 | Severe | < 0.5 | Concerning | Orange | +| 0.5 ≤ PBC1 < 0.8 | 1 ≤ PBC2 < 3 | Moderate | 0.5 ≤ NRF < 0.8 | Acceptable | Yellow | +| 0.8 ≤ PBC1 < 0.9 | 3 ≤ PBC2 < 10 | Mild | 0.8 ≤ NRF < 0.9 | Compliant | None | +| ≥ 0.9 | ≥ 10 | None | > 0.9 | Ideal | None | + # 5. deepTools ### rule deeptools_summary: