From 7a33f54eb3e59783bde1a74618ae5e2725bc5d53 Mon Sep 17 00:00:00 2001
From: Laura Cook <l.cook2@student.unimelb.edu.au>
Date: Fri, 28 Aug 2020 14:45:07 +1000
Subject: [PATCH] added merged input
---
dunnart/Snakefile | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/dunnart/Snakefile b/dunnart/Snakefile
index 7e42159..737feb7 100644
--- a/dunnart/Snakefile
+++ b/dunnart/Snakefile
@@ -555,15 +555,15 @@ rule call_peaks_macs2_pooled_replicates:
H3K27ac = "H3K27ac_pooled_macs2"
run:
shell(" macs2 callpeak -f BAMPE -t {input.H3K4me3} \
- -c {input.control4me3} --keep-dup all \
+ -c {input.input} --keep-dup all \
--outdir results/macs2/ -p 0.01 \
-n {params.H3K4me3} \
-g 2740338543 2> {log.H3K4me3} ")
shell("macs2 callpeak -f BAMPE -t {input.H3K27ac} \
- -c {input.control27ac} --keep-dup all \
+ -c {input.input} --keep-dup all \
--outdir results/macs2/ -p 0.01 \
-n {params.H3K27ac} \
- -g 2740338543 2> {H3K27ac} ")
+ -g 2740338543 2> {log.H3K27ac} ")
# ===============================================================================================
# 8. Peak QC
--
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