diff --git a/dunnart/Snakefile b/dunnart/Snakefile index 7e42159dcf15ec207879da40c4f0bca4bf5c96b2..737feb777d98ce42cfee03368994707424045ac2 100644 --- a/dunnart/Snakefile +++ b/dunnart/Snakefile @@ -555,15 +555,15 @@ rule call_peaks_macs2_pooled_replicates: H3K27ac = "H3K27ac_pooled_macs2" run: shell(" macs2 callpeak -f BAMPE -t {input.H3K4me3} \ - -c {input.control4me3} --keep-dup all \ + -c {input.input} --keep-dup all \ --outdir results/macs2/ -p 0.01 \ -n {params.H3K4me3} \ -g 2740338543 2> {log.H3K4me3} ") shell("macs2 callpeak -f BAMPE -t {input.H3K27ac} \ - -c {input.control27ac} --keep-dup all \ + -c {input.input} --keep-dup all \ --outdir results/macs2/ -p 0.01 \ -n {params.H3K27ac} \ - -g 2740338543 2> {H3K27ac} ") + -g 2740338543 2> {log.H3K27ac} ") # =============================================================================================== # 8. Peak QC