Remove module load spartan_2019

ABRicate/2019ABRicate-test.slurm

@@ -15,7 +15,6 @@
 
 # Load the environment variables
 module purge
-module load spartan_2019
 module load foss/2019b
 module load abricate/0.9.9-perl-5.30.0
 

ABySS/2019ABySS-test.slurm

@@ -15,7 +15,6 @@
 
 # Load the environment variables
 module purge
-module load spartan_2019
 module load foss/2019b
 module load abyss/2.1.5
 

ADMIXTURE/2019ADMIXTURE-test.slurm

@@ -16,7 +16,7 @@
 
 # Load the environment variables
 module purge
-module load spartan_2019
+
 module load admixture/1.3.0
 
 # Untar sample files, run application

AFNI/2019AFNI-test.slurm

@@ -15,7 +15,6 @@
 
 # Load the environment variables
 module purge
-module load spartan_2019
 module load foss/2019b
 module load afni/18.3.00-python-3.7.4
 

BAMM/2019BAMM-test.slurm

@@ -17,7 +17,6 @@
 # You must have an ultrametric phylogenetic tree. 
 # Load the environment variables
 module purge
-module load spartan_2019
 module load foss/2019b
 module load bamm/2.5.0
 

BBMap/2019BBMap-test.slurm

@@ -15,7 +15,6 @@
 
 # Load the environment variables
 module purge
-module load spartan_2019
 module load bbmap/38.76
 
 # See examples at:

BEDTools/2019BEDTools-test.slurm

@@ -12,7 +12,6 @@
 
 # Load the environment variables
 module purge
-module load spartan_2019
 module load foss/2019b
 module load bedtools/2.27.1
 

BLAST/2019blast.slurm

@@ -9,7 +9,6 @@
 
 # Load the environment variables
 module purge
-module load spartan_2019
 module load blast/2.10.0-linux_x86_64
 
 # Run the job

BWA/2019BWA-test.slurm

@@ -3,7 +3,6 @@
 
 # Set up enviroment PATH
 module purge
-module load spartan_2019
 module load foss/2019b
 module load bwa/0.7.17
 module load samtools/1.9

Beast/2019Beast-test.slurm

@@ -15,7 +15,6 @@
 
 # Load the environment variables
 module purge
-module load spartan_2019
 module load foss/2019b
 module load beast/2.5.1
 

CPMD/2019CPMD-test.slurm

@@ -16,7 +16,6 @@
 
 # Load the environment variables
 module purge
-module load spartan_2019
 module load foss/2019b
 module load cpmd/4.3
 

Cufflinks/2019Cufflinks-test.slurm

@@ -14,7 +14,6 @@
 
 # Load the environment variables
 module purge
-module load spartan_2019
 module load foss/2019b
 module load cufflinks/20190706
 

FFTW/2019FFTW-test.slurm

@@ -12,7 +12,6 @@
 
 # Load the environment variables
 module purge
-module load spartan_2019
 module load foss/2019b
 module load fftw/3.3.8
 

FSL/2019FSLsample1.slurm

@@ -2,7 +2,6 @@
 #SBATCH -t 0:30:00
 
 module purge
-module load spartan_2019
 module load foss/2019b
 module load fsl/6.0.1-python-3.7.4
 

FSL/2019FSLsample2.slurm

@@ -4,7 +4,6 @@
 #SBATCH -t 0:30:00
 
 module purge
-module load spartan_2019
 module load foss/2019b
 module load fsl/6.0.1-python-3.7.4
 

Gaussian/2019g16c01.slurm

@@ -6,7 +6,6 @@ INPUT_FILE="test0001.com"
 OUTPUT_FILE="test0001.log"
 
 module purge
-module load spartan_2019
 module load pgi/18.10-gcc-8.3.0-2.32
 module load gaussian/g16c01
 

Gurobi/2019gurobi.slurm

@@ -2,6 +2,5 @@
 #SBATCH --ntasks=1
 #SBATCH --cpus-per-task=8
 module purge
-module load spartan_2019
 module load gurobi/9.0.0
 time gurobi_cl misc07.mps

HMMER/2019HMMER-test.slurm

@@ -16,7 +16,6 @@
 
 # Load the environment variables
 module purge
-module load spartan_2019
 module load foss/2019b
 module load hmmer/3.2.1
 

HTSlib/2019HTSlib-test.slurm

@@ -12,7 +12,6 @@
 
 # Load the environment variables
 module purge
-module load spartan_2019
 module load foss/2019b
 module load htslib/1.9
 

JAGS/2019JAGS-test.slurm

@@ -15,7 +15,6 @@
 
 # Load the environment variables
 module purge
-module load spartan_2019
 module load foss/2019b
 module load jags/4.3.0
 

Julia/2019julia.slurm

 #!/bin/bash
 
+
 module purge
-module load spartan_2019
 module load julia/1.3.1-linux-x86_64
 julia simple.jl

MATLAB/2019matlab-p.slurm

@@ -3,7 +3,6 @@
 #SBATCH --time=1:0:0
 
 module purge
-module load spartan_2019
 module load matlab/2020a
 
 time matlab -nodesktop -nodisplay -nosplash < tictoc.m

MATLAB/2019matlab.slurm

 #!/bin/bash
 # One task, one core, default partition, ten minutes walltime
 module purge
-module load spartan_2019
 module load matlab/2020a
 matlab -nodesktop -nodisplay -nosplash< polar-plot.m

Mathematica/2019mathematica-test.slurm

@@ -14,7 +14,6 @@
 
 # Load the environment variables
 module purge
-module load spartan_2019
 module load mathematica/12.0.0
 
 # Read and evaluate the .m file

MrBayes/2019MrBayes-test.slurm

@@ -12,7 +12,6 @@
 
 # Load the environment variables
 module purge
-module load spartan_2019
 module load foss/2019b
 module load mrbayes/3.2.7
 

ORCA/2019ORCA.slurm

@@ -4,7 +4,6 @@
 #SBATCH --ntasks-per-node=4
 
 module purge
-module load spartan_2019
 module load foss/2019b
 module load orca/4.2.1
 

Octave/2019octave-array.slurm

@@ -7,7 +7,6 @@
 #SBATCH --array=1-10
 
 module purge
-module load spartan_2019
 module load octave/4.2.1
 
 octave file-${SLURM_ARRAY_TASK_ID}.oct

OpenFOAM/2019openfoam-parallel-1.slurm

@@ -5,7 +5,6 @@
 #SBATCH --time=0-00:10:00
 
 module purge
-module load spartan_2019
 module load foss/2019b
 module load openfoam/7
 

OpenFOAM/2019openfoam-parallel.slurm

@@ -7,7 +7,6 @@
 #SBATCH --time=0-00:10:00
 
 module purge
-module load spartan_2019
 module load foss/2019b
 module load openfoam/7
 

OpenFOAM/2019openfoam-single-1.slurm

@@ -4,7 +4,9 @@
 #SBATCH --ntasks=1
 #SBATCH --time=0-00:10:00
 
-module load OpenFOAM/5.0-intel-2017.u2
+module purge
+module load foss/2019b
+module load openfoam/7
 
 source $FOAM_BASH
 

OpenFOAM/2019openfoam-single-2.slurm

@@ -4,7 +4,9 @@
 #SBATCH --ntasks=1
 #SBATCH --time=0-00:10:00
 
-module load OpenFOAM/5.0-intel-2017.u2
+module purge
+module load foss/2019b
+module load openfoam/7
 
 source $FOAM_BASH
 

OpenMPI/2019mpi-gametheory.slurm

@@ -3,7 +3,7 @@
 #SBATCH --ntasks=2
 #SBATCH --time=0-00:10:00
 module purge
-module load spartan_2019
+
 
 module load gcc/8.3.0
 module load openmpi/3.1.4

OpenMPI/2019mpi-group.slurm

@@ -3,7 +3,7 @@
 #SBATCH --ntasks=8
 #SBATCH --time=0-00:10:00
 module purge
-module load spartan_2019
+
 
 module load gcc/8.3.0
 module load openmpi/3.1.4

OpenMPI/2019mpi-helloworld.slurm

@@ -2,7 +2,7 @@
 #SBATCH --ntasks=16
 
 module purge
-module load spartan_2019
+
 
 module load gcc/8.3.0
 module load openmpi/3.1.4

OpenMPI/2019mpi-particle.slurm

@@ -4,7 +4,7 @@
 #SBATCH --time=0-00:10:00
 
 module purge
-module load spartan_2019
+
 
 module load gcc/8.3.0
 module load openmpi/3.1.4

OpenMPI/2019mpi-ping.slurm

@@ -4,7 +4,7 @@
 #SBATCH --time=0-00:10:00
 
 module purge
-module load spartan_2019
+
 
 module load gcc/8.3.0
 module load openmpi/3.1.4

OpenMPI/2019mpi-pingpong.slurm

@@ -4,7 +4,7 @@
 #SBATCH --time=0-00:10:00
 
 module purge
-module load spartan_2019
+
 
 module load gcc/8.3.0
 module load openmpi/3.1.4

OpenMPI/2019mpi-sendrecv.slurm

@@ -4,7 +4,7 @@
 #SBATCH --time=0-00:10:00
 
 module purge
-module load spartan_2019
+
 
 module load gcc/8.3.0
 module load openmpi/3.1.4

Perl/2019perl.slurm

 #!/bin/bash
 #SBATCH --time=0:15:00
 module purge
-module load spartan_2019
 module load gcccore/8.3.0
 module load perl/5.30.0
 perl < metaperl.pl > output.txt

Python/2019twitter_one_node_eight_cores.slurm

@@ -5,7 +5,7 @@
 
 # Load required modules
 module purge
-module load spartan_2019
+
 module load foss/2019b 
 module load python/3.7.4 
 

Python/2019twitter_one_node_one_core.slurm

@@ -3,7 +3,7 @@
 
 # Load required modules
 module purge
-module load spartan_2019
+
 module load foss/2019b 
 module load python/3.7.4 
 

Python/2019twitter_two_nodes_four_cores.slurm

@@ -6,7 +6,7 @@
 
 # Load required modules
 module purge
-module load spartan_2019
+
 module load foss/2019b 
 module load python/3.7.4 
 

R/2019Rsample.slurm

@@ -15,7 +15,6 @@
 
 # Load the environment variables for R
 module purge
-module load spartan_2019
 module load r/4.0.0 
 
 # The command to actually run the job

SAMtools/2019SAMtools-test.slurm

@@ -12,7 +12,6 @@
 
 # Load the environment variables
 module purge
-module load spartan_2019
 module load foss/2019b
 module load samtools/1.9
 

SQLite/2019SQLite-test.slurm

@@ -12,7 +12,6 @@
 
 # Load the environment variables
 module purge
-module load spartan_2019
 module load gcccore/8.3.0
 module load sqlite/3.29.0
 

Singularity/2019singularity.slurm

@@ -2,7 +2,6 @@
 #SBATCH --time=00:15:00
 
 module purge
-module load spartan_2019
 module load singularity/3.5.3
 
 singularity exec vsoch-hello-world-master.simg echo "Hello from inside my container!" > output.txt

Tcl/2019Tcl-test.slurm

@@ -12,7 +12,6 @@
 
 # Load the environment variables
 module purge
-module load spartan_2019b
 module load gcccore/8.3.0
 module load tcl/8.6.9
 

Trimmomatic/2019trim.slurm

@@ -6,7 +6,6 @@
 #SBATCH --time=0:15:00
 
 module purge
-module load spartan_2019
 
 module load trimmomatic/0.39-java-11.0.2
 

Trimmomatic/2019trimloop.slurm

@@ -5,7 +5,6 @@
 #SBATCH --cpus-per-task=4
 #SBATCH --time=0:15:00
 module purge
-module load spartan_2019
 module load trimmomatic/0.39-java-11.0.2
 
 for infile in ./*_1.fastq.gz

beagle-lib/2019beagle-test.slurm

@@ -17,7 +17,6 @@
 # Load the environment variables
 module purge
 module load spartan_2019
-module load foss/2019b
 module load beast/2.5.1
 module load beagle-lib/3.0.2