Commit 5404be05 authored by root's avatar root
Browse files

Update for Aug 7

parent fe49bb25
......@@ -15,7 +15,6 @@
# Load the environment variables
module purge
module load spartan_2019
module load foss/2019b
module load abricate/0.9.9-perl-5.30.0
......
......@@ -15,7 +15,6 @@
# Load the environment variables
module purge
module load spartan_2019
module load foss/2019b
module load abyss/2.1.5
......
......@@ -16,7 +16,7 @@
# Load the environment variables
module purge
module load spartan_2019
module load admixture/1.3.0
# Untar sample files, run application
......
......@@ -15,7 +15,6 @@
# Load the environment variables
module purge
module load spartan_2019
module load foss/2019b
module load afni/18.3.00-python-3.7.4
......
......@@ -17,7 +17,6 @@
# You must have an ultrametric phylogenetic tree.
# Load the environment variables
module purge
module load spartan_2019
module load foss/2019b
module load bamm/2.5.0
......
......@@ -15,7 +15,6 @@
# Load the environment variables
module purge
module load spartan_2019
module load bbmap/38.76
# See examples at:
......
......@@ -12,7 +12,6 @@
# Load the environment variables
module purge
module load spartan_2019
module load foss/2019b
module load bedtools/2.27.1
......
......@@ -9,7 +9,6 @@
# Load the environment variables
module purge
module load spartan_2019
module load blast/2.10.0-linux_x86_64
# Run the job
......
......@@ -3,7 +3,6 @@
# Set up enviroment PATH
module purge
module load spartan_2019
module load foss/2019b
module load bwa/0.7.17
module load samtools/1.9
......
......@@ -15,7 +15,6 @@
# Load the environment variables
module purge
module load spartan_2019
module load foss/2019b
module load beast/2.5.1
......
......@@ -16,7 +16,6 @@
# Load the environment variables
module purge
module load spartan_2019
module load foss/2019b
module load cpmd/4.3
......
......@@ -32,6 +32,8 @@ To run a sample CUDA job start with interactive job.
sinteractive --partition=gpgputest -A hpcadmingpgpu --gres=gpu:p100:4
Change "hpcadmingpgpu" to another gpgpu project.
Load a CUDA module
`module load CUDA/8.0.44-GCC-4.9.2`
......
......@@ -14,7 +14,6 @@
# Load the environment variables
module purge
module load spartan_2019
module load foss/2019b
module load cufflinks/20190706
......
......@@ -12,7 +12,6 @@
# Load the environment variables
module purge
module load spartan_2019
module load foss/2019b
module load fftw/3.3.8
......
......@@ -2,7 +2,6 @@
#SBATCH -t 0:30:00
module purge
module load spartan_2019
module load foss/2019b
module load fsl/6.0.1-python-3.7.4
......
......@@ -4,7 +4,6 @@
#SBATCH -t 0:30:00
module purge
module load spartan_2019
module load foss/2019b
module load fsl/6.0.1-python-3.7.4
......
......@@ -7,7 +7,6 @@ sinteractive --nodes=1 --ntasks-per-node=2 --time=1:00:00
# Environment
module purge
module load spartan_2019
module load foss/2019b
# Valgrind
......
......@@ -6,7 +6,6 @@ INPUT_FILE="test0001.com"
OUTPUT_FILE="test0001.log"
module purge
module load spartan_2019
module load pgi/18.10-gcc-8.3.0-2.32
module load gaussian/g16c01
......
......@@ -13,7 +13,6 @@ cat <<- EOF > job${test}.slurm
#SBATCH --ntasks=1
#SBATCH --time=12:00:00
module purge
module load spartan_2019
module load pgi/18.10-gcc-8.3.0-2.32
module load gaussian/g16c01
g16 < test${test}.com > test${test}.log
......
......@@ -2,6 +2,5 @@
#SBATCH --ntasks=1
#SBATCH --cpus-per-task=8
module purge
module load spartan_2019
module load gurobi/9.0.0
time gurobi_cl misc07.mps
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