... | @@ -6,11 +6,14 @@ There are instructions for the installation of TimTam [[https://github.com/aezar |
... | @@ -6,11 +6,14 @@ There are instructions for the installation of TimTam [[https://github.com/aezar |
|
|
|
|
|
** Tutorials
|
|
** Tutorials
|
|
|
|
|
|
|
|
- [[https://github.com/aezarebski/timtam2/wiki/Constant-Parameters-Canonical][Constant Parameters]] considers a constant parameter birth-death-sampling model.
|
|
|
|
- [[https://github.com/aezarebski/timtam2/wiki/Constant-Parameters-R0][Constant Parameters and R0]] is similar to the tutorial above, but considers an
|
|
|
|
alternative parameterisation.
|
|
|
|
|
|
|
|
*** Less polished tutorials
|
|
|
|
|
|
- [[https://github.com/aezarebski/timtam2/wiki/Tutorial-0][Tutorial 0]] involves simulating data for subsequent tutorials (feel free to
|
|
- [[https://github.com/aezarebski/timtam2/wiki/Tutorial-0][Tutorial 0]] involves simulating data for subsequent tutorials (feel free to
|
|
skip this unless you are interested in simulating your own data.)
|
|
skip this unless you are interested in simulating your own data.)
|
|
- [[https://github.com/aezarebski/timtam2/wiki/Tutorial-1][Tutorial 1]] involves estimating the reproduction number and prevalence assuming
|
|
|
|
that the death and sampling rate are known using the sequences from
|
|
|
|
Tutorial 0.
|
|
|
|
- *UNDER CONSTRUCTION* [[https://github.com/aezarebski/timtam2/wiki/Tutorial-2][Tutorial 2]] simulates a new data set with a varying birth
|
|
- *UNDER CONSTRUCTION* [[https://github.com/aezarebski/timtam2/wiki/Tutorial-2][Tutorial 2]] simulates a new data set with a varying birth
|
|
rate but otherwise is similar to Tutorial 1. This will show you how to infer
|
|
rate but otherwise is similar to Tutorial 1. This will show you how to infer
|
|
rates that change through time.
|
|
rates that change through time.
|
... | | ... | |